Spreading of microbial communities in infant foods
Three hundred infant food samples were collected randomly from pharmacies and supermarkets in Makkah and Taif cities. The collected samples were subjected to micro-biological analyses. The results showed that the total bacterial counts (TBCs) were detected in almost all examined samples, with mean total viable counts ranging from 1.586 to 3.543 log
10 cfu/g. The results revealed that the total psychrotrophic spore bacteria were noticed in 40 and 60% of the whole samples of milk-based infant food with vegetables and fruits, respectively.
Distribution and identification of Bacillus spp
The samples were examined to determine their content of
Bacillus spp. by isolation of different morphological aerobic spore-forming colonies and then characterized (morphologically, biochemically and API CHB50 tests) using acceptable protocols of
Bacillus spp. identification. The distribution of diverse isolated
Bacillus species is illustrated in Fig 1. The results revealed that
B. subtilis was the most common species compared with other
Bacillus spp. with an incidence of 36%, followed by
B. cereus (27%),
B. circulans (20%),
B. licheniformis (12%) and
B. coagulans (5%). Vegetables and fruit milk-based infant foods had the highest numbers of
Bacillus spp. From the obtained
Bacillus isolates,
B. subtilis and
B. cereus, due to their hydrolytic activities, are essential for food hygiene.
Distribution and identification of Bacillus cereus
B. cereus bacteria calculated on PEMBA medium were detected in almost all tested samples with the highest percentages in milk-based infant food with fruits and vegetables, which reached 62.2 and 26.6%, respectively (Fig 2).
In contrast, the
B. cereus count was not high in the ready-to-use infant food with fruits and vegetables. Generally, 40 out of 300 samples (approximately 26.67%) of the examined infant foods were positive for
B. cereus counts.
Due to
Bacillus cereus isolate No. 8 pathogenicity and production of the 3 virulent harmful toxin-related genes,
B. cereus was identified using molecular biology techniques to confirm the biochemical and API CHB50 tests. The obtained sequence was compared with available sequences in the GenBank database and the similarity percentage of this isolate accounted for 98% with
Bacillus cereus strains. Additionally, a phylogenetic tree was constructed and it showed that this strain was very close to the type strains of
B. cereus deposited in the culture collection centre of the National Center for Biotechnology Information (Fig 3).
Molecular detection of toxicogenic-related genes
Three virulence genes (hbla, nhec, cytk) were screened in 25 B. cereus isolates using PCR. Only two isolates (8 and 9) carried all three genes. The hbla gene (1200 bp) appeared in five isolates and was mainly detected in samples from milk-based infant foods with fruit, rice, wheat and honey but with variable frequencies. The nhec gene showed a wider distribution across isolates from infant foods containing fruit, vegetables, honey and wheat, while it was absent in rice-based samples. In contrast, the cytk gene exhibited the highest prevalence, being detected in 92% of isolates collected from all infant food types examined. Overall, isolate 8-obtained from milk-based infant food with fruit-showed the strongest hbla band intensity among the positive samples (Fig 4).
Detoxification and reduced pathogenicity of B. cereus using Lact. rhamnosus
The cell-free supernatant containing bioactive metabolites of probiotic strains was obtained and employed against the
B. cereus strain using an agar well diffusion assay. The data from the pictures illustrated in Fig 5 show that the strain
Lact. rhamnosus B-445 produced high antibacterial activity against the
B. cereus strain, with a 21 mm inhibition zone diameter, followed by
Lb. dulbrueckii and
Lb. cremoris, but
Leuconostoc mesenteroides appeared to have no activity. The antagonistic activity of
Lact. rhamnosus against
B. cereus was assessed in the broth culture media system and the results are illustrated in Fig 5. From that, we can clearly show the antagonism between the two tested strains. The growth of the
B. cereus strain was inhibited under mixed culture with
Lact. rhamnosus starting from 6 h of incubation.
Lact. rhamnosus exposed a high inhibitory activity against the
B. cereus strain, resulting in a decrease in the total counts from 5.3 to 3.3 Log
10 cfu/mL after 24 h with a reduction of 37.7% and reached 2.0 Log
10 cfu/mL with a reduction of 62.2% after 48 h of incubation.
Toxicology studies of B. cereus cells and crude toxins
The probiotic strain
Lact. rhamnosus was mixed with
B. cereus and/or its emetic toxins and added to the diets of the experimental mice. After three days of the experiment, the groups treated with
B. cereus cells and its emetic toxin, groups two and three, showed some clinical signs, such as increased mortality and decreased weight compared with the other groups. The control group did not show any abnormal weight changes (ranging between 100 and 103 g) after three days. While mice fed with bacterial cells of
B. cereus showed loss of their body weight and slower movement; their weights ranged from 72 to 75 g and two of five mice died. Additionally, four out of five mice in the group fed emetic toxins died and the remaining mice had a clear decrease in their weight to 60 g and slower movement. However, the group fed a mixture of
B. cereus cells and
Lact. rhamnosus exhibited normal appearance and movement with weights reaching 93-94 g. Moreover, the mouse group provided a mix of crude toxins and
Lact. rhamnosus culture displayed normal appearance, motion and weight, with weights ranging between 98 and 101 g. The group was fed with a diet containing
Lact. rhamnosus culture appeared to exhibit normal behaviour and their weight reached 100-105 g. Anatomical examination of the gastrointestinal tract of dissected mice revealed swelling of the intestinal tract due to fluid accumulation in the intestine’s lumen and inflammation of the intestines and stomach, particularly when mice were fed with the
B. cereus. Additionally, ulcers and dark red spots were observed in the liver of groups fed with
B. cereus, indicating severe vascular effects of the toxin. In contrast, no significant changes were noted in the stomach and intestines of mice treated with crude emetic enterotoxin. However, the group fed a mixture of
B. cereus and
Lactobacillus rhamnosus showed a normal stomach, intestine and liver compared to the control group. Similarly, the group fed a mixture
of B. cereus emetic enterotoxin and
Lactobacillus rhamnosus B-445 exhibited normal stomach, intestine and liver conditions. Furthermore, the group fed the diet with Lactobacillus rhamnosus B-445 appeared normal in all examined body contents (Fig 6).
Infant foods are certified as a primary nutrition source for babies from seven months to 2 years old. Thus, they should represent a rich source of nutrients from several origins. However, germs in babies’ food can cause severe infection due to their immune systems not being completely developed
(Martin et al., 2010). This study evaluated the hygiene of infant foods and tried to improve the quality of these foods. To achieve this objective, three hundred infant food samples were collected randomly from pharmacies and supermarkets in Makkah and Taif cities, Saudi Arabia. The collected samples were subjected to microbiological analyses. The results showed that the total bacterial counts (TBCs) were detected in almost all samples, with mean complete viable counts ranging from 1.586 to 3.543 log
10 cfu/g. A similar observation was reported by other researchers (
Gautam, 2015;
Luby et al., 2011).
The TBC falls within standard regulations; therefore, it is less critical than spore-forming and pathogenic bacterial counts. High TBC values generally indicate poor hygienic practices during handling, packaging, or the use of low-quality ingredients (
Mokgaotsi, 2019). For this reason, total psychrotrophic spore-forming bacteria were also evaluated and they were detected in 40% and 60% of milk-based infant foods with vegetables and fruits, respectively.
At this stage, psychrotrophic spore bacteria in infant milk meals were reported at 2.9 × 10² cfu/g
(Ahmed et al., 2008) and another study showed that 40% of vegetable-based baby foods tested positive (
Sadek et al., 2018).
Bacillus spp. were isolated and identified following standard morphological, biochemical and API CHB50 protocols, with
B. subtilis being the most common species in milk-based vegetable and fruit foods. Controlling
B. subtilis and
B. cereus is essential due to their hydrolytic activities, toxin production and ability to grow at refrigeration temperatures. These findings agree with previous reports detecting
B. subtilis (28%),
B. licheniformis (20%) and
B. cereus (14%) in infant formulae
(Mostafa et al., 2002). Although less prevalent, B. cereus remains the most harmful due to its pathogenicity and toxin production. FDA regulations require
B. cereus levels to remain below 100 cfu/g. In this study,
B. cereus was detected in all tested samples, especially milk-based infant foods with fruits and vegetables, while absent in ready-to-use products. Other studies similarly reported
B. cereus contamination in powdered milk and a variety of infant foods
(Kim et al., 2011). Differences in prevalence are likely related to sample type, testing method and product formulation. Previous research has suggested applying stable, nontoxic bioactive compounds and food-grade natural materials to reduce
B. cereus in infant foods (
Sadek et al., 2018).
The pathogenicity of
B. cereus was assessed by detecting three key enterotoxin-related genes
hbla, nhec and
cytk using PCR. Two isolates (8 and 9) carried all three virulence genes. Toxigenic
B. cereus strains have been previously reported in a wide range of starchy and dairy-based foods
(Jovanovic et al., 2021; Mohammadi, 2023), emphasizing the need to evaluate the safety of infant foods commonly marketed in Saudi Arabia. PCR detection methods are increasingly applied for identifying these genes
(Kim et al., 2000). In this study, isolate 8 originating from milk-based infant food with fruit was positive for the
hbla gene, consistent with earlier reports detecting
hbla in dairy and child-related foods
(Rahimi et al., 2013). Gene distribution patterns varied according to food type, season and collection conditions. The
nhec gene was widespread among isolates from fruit-, vegetable-, honey- and wheat-based infant foods but absent in rice-based samples, matching previous findings where nhec occurred in 80% of infant-food isolates
(Rahimi et al., 2013). The
cytk gene showed the highest prevalence, appearing across all food categories examined. As cytk is strongly associated with severe food-poisoning outbreaks, isolate 8 was selected as the pathogenic reference strain. Its genomic DNA was extracted and the 16S rRNA gene sequence showed 98% similarity to known
B. cereus strains. Phylogenetic analysis confirmed its close relationship to established
B. cereus type strains in the NCBI database.
The antimicrobial activity of the probiotic strains was assessed using cell-free supernatants in an agar well diffusion assay, where
Lact. rhamnosus B-445 showed the strongest inhibition against
B. cereus (21 mm), followed by
Lb. dulbrueckii,
Lb. cremoris and
Leuconostoc mesenteroides. This variation reflects differences in the production of bioactive compounds such as organic acids, polysaccharides and bacteriocins
(Liu et al., 2023; Moniri et al., 2017). LAB strains,
including Lact. rhamnosus B-445 and
Lb. dulbrueckii, are known for their antibacterial activity against
Bacillus spp. (
Ahmad et al., 2022;
Zeinab et al., 2015). In broth co-culture,
Lact. rhamnosus markedly suppressed
B. cereus growth, reducing counts from 5.3 to 3.3 Log
10 cfu/mL at 24 h and to 2.0 Log
10 cfu/mL at 48 h. This inhibition is attributed to bacteriocins and related metabolites with applications in food biopreservation
(Fuochi et al., 2019).
Infant foods require high hygiene standards because
B. cereus is a pathogenic bacterium that poses significant health risks. The bacterium is particularly dangerous due to its spore-forming ability, which makes it resistant to thermal treatments and its toxins remain stable even under hygienic controls. To investigate a safe protective agent, the probiotic strain
Lact. rhamnosus was mixed with
B. cereus cells and/or emetic toxins and incorporated into mice diets. Mice fed only
B. cereus cells or toxin alone experienced severe clinical signs including significant weight loss (60-75 g), reduced mobility and high mortality with 4 out of 5 mice in the toxin-treated group dying. However, mice fed
B. cereus (cells or toxins) combined with
Lact. rhamnosus maintained normal weight (93-105 g) and exhibited normal behavior and movement. Pathological examination revealed that mice exposed to
B. cereus alone developed swollen intestinal tracts, ulcers and dark coloration of the liver. In contrast, groups treated with
B. cereus mixed with
Lact. rhamnosus showed normal stomach, intestine and liver tissues. These findings demonstrate that
Lact. rhamnosus B-445 could serve as an effective and environmentally safe protective agent against
B. cereus in infant foods. Probiotic supple-mentation has been widely applied to improve microbial balance and health performance in food-related biological systems, as reported in previous publications
(Barde et al., 2025).